# \#tutorial

**URL:** https://discourse.canceridc.dev/tag/tutorial/24.md

[Latest](https://discourse.canceridc.dev/latest.md) · [Categories](https://discourse.canceridc.dev/categories.md) · [Tags](https://discourse.canceridc.dev/tags.md)

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## [Get started with TIAToolbox to analyze IDC pathology images](https://discourse.canceridc.dev/t/get-started-with-tiatoolbox-to-analyze-idc-pathology-images/779)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [February 25, 2026, 6:06pm UTC](https://discourse.canceridc.dev/t/get-started-with-tiatoolbox-to-analyze-idc-pathology-images/779 "2026-02-25T18:06:25Z")

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Interested in digital pathology image analysis but not sure where to start? Check out the new set of interactive python notebook tutorials demonstrating how to use open-source TIAToolbox with the slide microscopy images …

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## [CC Tumor heterogenity Pelvis dataset metadata and registration details](https://discourse.canceridc.dev/t/cc-tumor-heterogenity-pelvis-dataset-metadata-and-registration-details/714)

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**Author:** [@Sivapriya\_P\_J](https://discourse.canceridc.dev/u/Sivapriya_P_J)\
**Replies:** 13\
**Last updated:** [May 22, 2025, 9:40am UTC](https://discourse.canceridc.dev/t/cc-tumor-heterogenity-pelvis-dataset-metadata-and-registration-details/714 "2025-05-22T09:40:14Z")

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I am trying to align the MR, CT and PET files in CC Tumor Heterogenity dataset. But I am facing issues with the tags in coregistration files not matching with corresponding folders of MRI,CT,PET etc. Need help with the c…

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## [NLST clinical data notebook question](https://discourse.canceridc.dev/t/nlst-clinical-data-notebook-question/642)

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**Author:** [@kirbyju](https://discourse.canceridc.dev/u/kirbyju)\
**Replies:** 3\
**Last updated:** [November 19, 2024, 8:45pm UTC](https://discourse.canceridc.dev/t/nlst-clinical-data-notebook-question/642 "2024-11-19T20:45:24Z")

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I was just looking over your notebook at IDC-Tutorials/notebooks/collections\_demos/nlst\_clinical\_data.ipynb at master · ImagingDataCommons/IDC-Tutorials · GitHub. This does a really nice job making it easy to track do…

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## [New tutorial notebook: working with clinical data in IDC](https://discourse.canceridc.dev/t/new-tutorial-notebook-working-with-clinical-data-in-idc/612)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 1\
**Last updated:** [November 15, 2024, 4:13pm UTC](https://discourse.canceridc.dev/t/new-tutorial-notebook-working-with-clinical-data-in-idc/612 "2024-11-15T16:13:59Z")

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Many collections in IDC are accompanied by collection-specific metadata describing characteristics of the patient, disease, therapy etc. In IDC we refer to those broadly as “clinical data”. In a new beginner-level tutor…

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## [Assistance with 3D Reconstruction of VHP Files](https://discourse.canceridc.dev/t/assistance-with-3d-reconstruction-of-vhp-files/634)

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**Author:** [@matheus](https://discourse.canceridc.dev/u/matheus)\
**Replies:** 10\
**Last updated:** [October 8, 2024, 7:58pm UTC](https://discourse.canceridc.dev/t/assistance-with-3d-reconstruction-of-vhp-files/634 "2024-10-08T19:58:07Z")

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My name is Matheus, and I am a Biomedical Engineer based in Brazil. I am currently working with some files from the Visible Human Project (VHP) and would like to perform a 3D reconstruction of them. I followed the step-…

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## [New notebook: experimenting with MedSAM applied to IDC data](https://discourse.canceridc.dev/t/new-notebook-experimenting-with-medsam-applied-to-idc-data/564)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [February 27, 2024, 3:51pm UTC](https://discourse.canceridc.dev/t/new-notebook-experimenting-with-medsam-applied-to-idc-data/564 "2024-02-27T15:51:03Z")

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If you are in medical imaging, you must have heard about MedSAM. We have recently published a new Colab notebook that demonstrates how you can experiment with MedSAM applied to any of the \>50TB of images publicly availab…

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## [Searching DICOM private tags for IDC data](https://discourse.canceridc.dev/t/searching-dicom-private-tags-for-idc-data/534)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [December 11, 2023, 9:01pm UTC](https://discourse.canceridc.dev/t/searching-dicom-private-tags-for-idc-data/534 "2023-12-11T21:01:13Z")

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As much as we would like the world to be perfect and for all vendors to use standard tags, it remains the case that we still need to rely on private tags for sometime critical information accompanying the images. Fortun…

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## [New paper about IDC + meet us at RSNA 2023](https://discourse.canceridc.dev/t/new-paper-about-idc-meet-us-at-rsna-2023/530)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [November 24, 2023, 10:51pm UTC](https://discourse.canceridc.dev/t/new-paper-about-idc-meet-us-at-rsna-2023/530 "2023-11-24T22:51:20Z")

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I am happy to share that our RadioGraphics paper went live today! This paper aims to provide the current summary of IDC, our active developments and some of the future plans: Fedorov, A., Longabaugh, W. J. R., Pot, D.,…

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## [How to download lung CT imaging data, including clinical data.](https://discourse.canceridc.dev/t/how-to-download-lung-ct-imaging-data-including-clinical-data/525)

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**Author:** [@Gao](https://discourse.canceridc.dev/u/Gao)\
**Replies:** 3\
**Last updated:** [November 9, 2023, 4:54pm UTC](https://discourse.canceridc.dev/t/how-to-download-lung-ct-imaging-data-including-clinical-data/525 "2023-11-09T16:54:22Z")

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Hello everyone, I have a question about how to download CT imaging data of the lungs, which includes clinical data for my future research. Thank you very much for your help and the contribution value of the open source d…

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## [New tutorial: Deploy your own Slim Viewer on Google Cloud](https://discourse.canceridc.dev/t/new-tutorial-deploy-your-own-slim-viewer-on-google-cloud/498)

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**Author:** [@Daniela](https://discourse.canceridc.dev/u/Daniela)\
**Replies:** 0\
**Last updated:** [September 1, 2023, 8:07am UTC](https://discourse.canceridc.dev/t/new-tutorial-deploy-your-own-slim-viewer-on-google-cloud/498 "2023-09-01T08:07:42Z")

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Some time ago we shared a tutorial on how to deploy the OHIF viewer as a web application for visualizing images that are in the cloud, but not in IDC, or visualizing annotations you are creating for the images in IDC. Th…

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## [IDC workshop/tutorial at the 38th NA-MIC Project Week today!](https://discourse.canceridc.dev/t/idc-workshop-tutorial-at-the-38th-na-mic-project-week-today/388)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [February 1, 2023, 11:22am UTC](https://discourse.canceridc.dev/t/idc-workshop-tutorial-at-the-38th-na-mic-project-week-today/388 "2023-02-01T11:22:12Z")

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Quite a few of the IDC team members are attending 38th NA-MIC Project Week working on the projects related to DICOM, reproducible analysis workflows, visualization, integration with new tools etc - learn more at the proj…

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## [New tutorial: Deploy your own OHIF Viewer on Google Cloud](https://discourse.canceridc.dev/t/new-tutorial-deploy-your-own-ohif-viewer-on-google-cloud/255)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 4\
**Last updated:** [September 13, 2022, 4:29pm UTC](https://discourse.canceridc.dev/t/new-tutorial-deploy-your-own-ohif-viewer-on-google-cloud/255 "2022-09-13T16:29:30Z")

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There will be times when you want to visualize images that you have, which are not included in IDC, or look at the analysis results you prepared for the datasets in IDC. We want to help you apply the same visualization t…

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## [Extracting custom patch sizes for lung CT nodule segmentation demo](https://discourse.canceridc.dev/t/extracting-custom-patch-sizes-for-lung-ct-nodule-segmentation-demo/289)

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**Author:** [@adwaykanhere](https://discourse.canceridc.dev/u/adwaykanhere)\
**Replies:** 15\
**Last updated:** [August 15, 2022, 8:55pm UTC](https://discourse.canceridc.dev/t/extracting-custom-patch-sizes-for-lung-ct-nodule-segmentation-demo/289 "2022-08-15T20:55:36Z")

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Hi, I’m following the ai-notebooks tutorial and working through the updated notebook. My question is not related to a technical difficulty but rather a design choice - The paper that is referenced in the notebook ta…

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## [IDC will present at a MICCAI 2021 tutorial on Sept 27](https://discourse.canceridc.dev/t/idc-will-present-at-a-miccai-2021-tutorial-on-sept-27/204)

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**Author:** [@fedorov](https://discourse.canceridc.dev/u/fedorov)\
**Replies:** 0\
**Last updated:** [September 24, 2021, 2:53am UTC](https://discourse.canceridc.dev/t/idc-will-present-at-a-miccai-2021-tutorial-on-sept-27/204 "2021-09-24T02:53:46Z")

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If you are interested to get a brief introduction and hopefully engaging demonstrations of the IDC functionality, please join us at the “NIH Cancer Imaging Data Repositories for Biomedical Data Science Research” tutorial…

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## [Tutorial for 3D classification with IDC and Google Cloud](https://discourse.canceridc.dev/t/tutorial-for-3d-classification-with-idc-and-google-cloud/167)

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**Author:** [@po.rouzrokh](https://discourse.canceridc.dev/u/po.rouzrokh)\
**Replies:** 1\
**Last updated:** [May 13, 2021, 2:35pm UTC](https://discourse.canceridc.dev/t/tutorial-for-3d-classification-with-idc-and-google-cloud/167 "2021-05-13T14:35:42Z")

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Dear all, In the Radiology Informatics Lab at Mayo Clinic (MN), we have been working on developing a couple of tutorial notebooks to work with IDC database. Like the previous tutorial notebooks my colleagues have alread…

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## [Use API to get collections metadata](https://discourse.canceridc.dev/t/use-api-to-get-collections-metadata/157)

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**Author:** [@cgmeyer](https://discourse.canceridc.dev/u/cgmeyer)\
**Replies:** 7\
**Last updated:** [April 22, 2021, 11:22pm UTC](https://discourse.canceridc.dev/t/use-api-to-get-collections-metadata/157 "2021-04-22T23:22:07Z")

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I’m curious if there is a way to send a request to your API to get the list of collections and their metadata listed in the collections panel here: https://portal.imaging.datacommons.cancer.gov/collections/ I’m trying …

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## [Tutorial notebook preparation](https://discourse.canceridc.dev/t/tutorial-notebook-preparation/147)

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**Author:** [@giemmecci](https://discourse.canceridc.dev/u/giemmecci)\
**Replies:** 6\
**Last updated:** [April 20, 2021, 8:13pm UTC](https://discourse.canceridc.dev/t/tutorial-notebook-preparation/147 "2021-04-20T20:13:40Z")

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Hi, I’m in the process of exploring the IDC portal to prepare a tutorial notebook for the platform. For now, to explore the use of BigQuery and play around with the IDC, I’ve copied one of the Colab notebooks examples t…